Genome & Tool | Recall (%) | Precision (%) | F1 (%) | GT | TP | FP | Total Predictions | Memory (%) | Time (HH:MM:SS) |
---|---|---|---|---|---|---|---|---|---|
Oryza sativa japonica | |||||||||
Look4LTRs-SS | 90.80 | 92.78 | 91.78 | 1,500 | 1,362 | 106 | 10,462 | 12.94 | 00:01:51 |
Look4LTRs-CS | 91.80 | 92.48 | 92.14 | 1,500 | 1,377 | 112 | 10,315 | – | – |
LTRharvest | 72.67 | 91.37 | 80.95 | 1,500 | 1,090 | 103 | 6,684 | 0.34 | 00:05:54 |
LtrDetector | 86.87 | 85.67 | 86.26 | 1,500 | 1,303 | 218 | 10,659 | 15.61 | 00:05:44 |
Oryza glaberrima | |||||||||
Look4LTRs-SS | 79.15 | 83.17 | 81.11 | 331 | 262 | 53 | 5,128 | 7.25 | 00:01:13 |
Look4LTRs-CS | 87.61 | 83.82 | 85.67 | 331 | 290 | 56 | 5,297 | – | – |
LTRharvest | 83.69 | 81.71 | 82.69 | 331 | 277 | 62 | 3,942 | 0.26 | 00:02:45 |
LtrDetector | 91.24 | 69.43 | 78.85 | 331 | 302 | 133 | 5,192 | 13.02 | 00:02:00 |
Oryza sativa indica | |||||||||
Look4LTRs-SS | 81.71 | 70.38 | 75.62 | 410 | 335 | 141 | 13,845 | 8.16 | 00:02:03 |
Look4LTRs-CS | 83.17 | 69.31 | 75.61 | 410 | 341 | 151 | 13,829 | – | – |
LTRharvest | 74.39 | 71.93 | 73.14 | 410 | 305 | 119 | 8,543 | 0.36 | 00:04:20 |
LtrDetector | 77.56 | 54.83 | 64.24 | 410 | 318 | 262 | 15,865 | 15.51 | 00:13:35 |
Oryza longistaminata | |||||||||
Look4LTRs-SS | 63.49 | 26.76 | 37.65 | 126 | 80 | 219 | 13,132 | 7.49 | 00:03:08 |
Look4LTRs-CS | 65.08 | 26.45 | 37.61 | 126 | 82 | 228 | 12,678 | – | – |
LTRharvest | 52.38 | 23.57 | 32.51 | 126 | 66 | 214 | 12,226 | 0.36 | 00:04:37 |
LtrDetector | 57.94 | 16.70 | 25.93 | 126 | 73 | 364 | 18,802 | 15.00 | 00:14:38 |
Oryza rufipogon | |||||||||
Look4LTRs-SS | 79.39 | 60.94 | 68.95 | 228 | 181 | 116 | 8,281 | 7.79 | 00:01:50 |
Look4LTRs-CS | 86.40 | 62.15 | 72.29 | 228 | 197 | 120 | 8,330 | – | – |
LTRharvest | 85.96 | 59.39 | 70.25 | 228 | 196 | 134 | 6,436 | 0.31 | 00:03:39 |
LtrDetector | 85.53 | 41.85 | 56.20 | 228 | 195 | 271 | 11,373 | 13.64 | 00:03:40 |
Overall | |||||||||
Look4LTRs-SS | 85.55 | 77.76 | 81.47 | 2,595 | 2,220 | 635 | 50,848 | 12.94 | 00:10:05 |
Look4LTRs-CS | 88.13 | 77.42 | 82.43 | 2,595 | 2,287 | 667 | 50,449 | 18.54a | 00:08:51a |
LTRharvest | 74.53 | 75.37 | 74.95 | 2,595 | 1,934 | 632 | 37,831 | 0.36 | 00:21:15 |
LtrDetector | 84.43 | 63.71 | 72.62 | 2,595 | 2,191 | 1,248 | 61,891 | 15.61 | 00:39:37 |