Table 1 Datasets used for testing the TE de novo detection tools
From: Software evaluation for de novo detection of transposons
Dataset | Genome version | Sequences | Length | TE-fraction |
|---|---|---|---|---|
Human genome | GRCh38/hg38 p12 | Chromosome 21 | 46.7 Mb | 36.74% |
Zebrafish | GRCz11/danRe 11 | Chromosome 1 | 59.6 Mb | 46.58% |
Fruit fly | BDGP Release 6 | Whole genome | 137.5 Mb | 17.55% |
Simulated data | n/a | Simulation | 100.1 Mb | 60.00% |